Lily-db: A Genomic Treasure For The Family Liliaceae
 
Expressions Profiling

Search Expression Data

1.    Gene Status:  

2.    Unigene ID:   [ e.g. TBIU000012 ]

3.    Gene Name:   [ e.g. WRKY ]



Note: L. formolongi cv. Sinnapal Lily transcriptome

RNA-seq data were generated with the Illumina Hiseq 2000 platform, using leaf tissue from Lilium formolongi cv. ‘Sinnapal’ after infection with Botrytis elliptica spores, and collected at five time points (0h, 8h and 1, 2, 5, and 7 days).

+ Read Quality - Read Quality
No Name Raw Clean Low Quality reads
Read Base Base(>Q30) Reads Basepair
1 BE0h 135,819,704 6,858,895,052 6,051,919,503 119,046,120
(87.7%)		 5,985,444,702
(87.3%)		 16,339,412
(12.0%)
2 BE8h 148,255,724 7,486,914,062 6,728,441,196 133,992,040
(90.4%)		 6,734,907,100
(90.0%)		 13,777,324
( 9.3%)
3 BE1d 136,336,492 6,884,992,846 6,168,906,341 122,356,224
(89.7%)		 6,151,329,860
(89.3%)		 13,559,284
( 9.9%)
4 BE2d 162,812,528 8,222,032,664 7,241,089,728 146,166,924
(89.8%)		 7,343,447,112
(89.3%)		 16,000,580
( 9.8%)
5 BE5d 183,830,184 9,283,424,292 8,135,667,428 163,371,796
(88.9%)		 8,213,616,684
(88.5%)		 19,846,148
(10.8%)
6 BE7d 156,251,112 7,890,681,156 6,930,501,956 139,991,404
(89.6%)		 7,037,667,834
(89.2%)		 15,698,820
(10.0%)


+ Assembly - Assembly
Basepairs Number of unigenes Average length of unigenes
60,382,994 90,115 670

Length distribution of assembled unigenes


Search Expression Data

1.    Unigene ID:   [ e.g. TBIU000020 ]

2.    Gene Status:  

3.    Gene Name:   [ e.g. WRKY ]

4.    GO Id:            [ e.g. GO:0005524 ]



Note: L. longiflorum White tower Lily transcriptome

Seeds of Lilium longiflorum cv. Napal and Lilium formolongi cv Shinnapal were sown in plastic pot contains sterilized potting mixture and kept in green house at 22 °C under 12 hours of light and 12 hours of darkness condition until flowering both species. After first flower flourish pollen from the L. formolongi cv shinnapal was use to pollination in to Lilium longiflorum cv. Napal. After pollination Botrytis elliptica spore suspension culture were sprayed in to the pollinated plant and also non pollinated Lilium longiflorum cv. Napal (as control). Then leaf samples from both pollinated and non pollinated were collected in the six time course (0h, 12h, 24h, 5days, 10 days and 20 days) and immediately frozen in liquid nitrogen then stored at −80 °C until RNA extraction.

+ Read Quality - Read Quality
No Name Raw Clean Low Quality reads
Read Base Base(>Q30) Reads Basepair
1 CP2d 65,564,914 6,622,056,314 5,984,706,414 59,981,874 (91.5%) 6,035,864,192 (91.1%) 5,431,518 ( 8.3%)
2 CP7d 69,015,980 6,970,613,980 6,265,605,889 62,623,476 (90.7%) 6,300,655,018 (90.4%) 6,230,874 ( 9.0%)
3 CP9d 70,076,326 7,077,708,926 6,347,188,166 63,530,746 (90.7%) 6,392,002,373 (90.3%) 6,375,102 ( 9.1%)
4 CP11d 70,279,958 7,098,275,758 6,422,966,210 64,418,166 (91.7%) 6,480,921,299 (91.3%) 5,681,184 ( 8.1%)
5 CP28d 72,813,770 7,354,190,770 6,634,234,707 66,381,120 (91.2%) 6,677,817,108 (90.8%) 6,242,876 ( 8.6%)
6 NP2d 74,715,778 7,546,293,578 6,768,279,308 67,616,656 (90.5%) 6,801,396,843 (90.1%) 6,908,252 ( 9.2%)
7 NP7d 88,552,386 8,943,790,986 8,047,156,906 80,309,740 (90.7%) 8,079,150,355 (90.3%) 7,993,246 ( 9.0%)
8 NP9d 76,791,724 7,755,964,124 6,973,595,910 69,138,682 (90.0%) 6,959,281,319 (89.7%) 7,447,606 ( 9.7%)
9 NP11d 68,442,304 6,912,672,704 6,249,541,831 62,152,792 (90.8%) 6,255,245,744 (90.5%) 6,116,370 ( 8.9%)
10 NP28d 71,357,570 7,207,114,570 6,500,905,361 64,699,426 (90.7%) 6,508,082,243 (90.3%) 6,466,180 ( 9.1%)

+ Assembly - Assembly
Basepairs Number of unigenes Average length of unigenes
57,965,647 85,647 677









Search Expression Data

1.    Unigene ID:   [ e.g. c48131_g1_i1 ]

2.    Gene Status:  

3.    Gene Name:   [ e.g. WRKY ]

4.    GO Id:           



Note: L. longiflorum Easter Lily transcriptome

Seeds of four inbreed lines (L2-4, L2-28, L2-22, and L2-20) and their two hybrids L4-7 (L2-4 × L2-28) and L4-104 (L2-22 × L2-20) of Lilium longiflorum (Easter lily) were sown in plastic pots containing sterilized soil mixture for germination, and seedlings were produced in a green house at 22 °C under 12 hours of light and 12 hours of darkness. Leaves of 4 months aged seedlings were sampled with three replicates. The leaves of three replicates were combined for RNA extraction. Samples were immediately frozen in liquid nitrogen and stored at −80 °C in preparation for RNA-Seq analysis. 

Result published :
Howlader J, Robin AHK, Natarajan S, Biswas MK, Sumi KR, Song CY, Park JI, Nou IS: Transcriptome Analysis by RNA–Seq Reveals Genes Related to Plant Height in Two Sets of Parent-hybrid Combinations in Easter lily (Lilium longiflorum). Scientific Reports 2020, 10(1):9082.


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